Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glycosidase | DWX04_07400 | Not Available | Negative | 1779346 - 1780944 | 59543.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_07405 | Not Available | Negative | 1781061 - 1782719 | 63057.9 |
| tonb-dependent receptor | DWX04_07410 | Not Available | Negative | 1782737 - 1785775 | 112357.0 |
| hypothetical protein | DWX04_07415 | Not Available | Negative | 1785798 - 1787297 | 56154.5 |
| hybrid sensor histidine kinase/response regulator | DWX04_07420 | Not Available | Positive | 1787511 - 1791551 | 153039.0 |
| histidine-type phosphatase | DWX04_07425 | Not Available | Negative | 1791798 - 1793537 | 66735.8 |
| glycoside hydrolase family 92 protein | DWX04_07430 | Not Available | Negative | 1793544 - 1795823 | 86105.8 |
| glycoside hydrolase family 28 protein | DWX04_07435 | Not Available | Negative | 1795826 - 1797238 | 52158.1 |
| glycoside hydrolase family 92 protein | DWX04_07440 | Not Available | Negative | 1797264 - 1799597 | 88729.1 |
| glycerophosphodiester phosphodiesterase | DWX04_07445 | Not Available | Negative | 1799617 - 1800429 | 31017.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

