Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma factor | DWX04_00395 | Not Available | Negative | 83214 - 84068 | 32355.8 |
| rna polymerase sigma-70 factor | DWX04_00400 | Not Available | Negative | 84065 - 84616 | 22089.7 |
| carboxypeptidase-like regulatory domain-containing protein | DWX04_00405 | Not Available | Negative | 84668 - 85945 | 49630.8 |
| duf1648 domain-containing protein | DWX04_00410 | Not Available | Negative | 86045 - 86635 | 22101.6 |
| arc family dna-binding protein | DWX04_00415 | Not Available | Negative | 86554 - 86748 | 7471.13 |
| spfh domain-containing protein | DWX04_00420 | Not Available | Negative | 86757 - 87707 | 35385.2 |
| hypothetical protein | DWX04_00425 | Not Available | Negative | 87737 - 87937 | 8012.94 |
| helicase | DWX04_00430 | Not Available | Positive | 88277 - 90277 | 76847.1 |
| threonylcarbamoyl-amp synthase | DWX04_00435 | Not Available | Positive | 90284 - 90898 | 23103.3 |
| mechanosensitive ion channel family protein | DWX04_00440 | Not Available | Positive | 90947 - 91780 | 30653.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

