Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxamine kinase | DWX04_07200 | Not Available | Negative | 1728263 - 1729135 | 32693.4 |
| glutamate racemase | DWX04_07205 | Not Available | Negative | 1729192 - 1730037 | 31392.0 |
| omph family outer membrane protein | DWX04_07210 | Not Available | Negative | 1730140 - 1730643 | 19260.2 |
| omph family outer membrane protein | DWX04_07215 | Not Available | Negative | 1730701 - 1731216 | 18967.6 |
| outer membrane protein assembly factor bama | DWX04_07220 | Not Available | Negative | 1731237 - 1733879 | 100747.0 |
| isoprenyl transferase | DWX04_07225 | Not Available | Negative | 1733891 - 1734622 | 28126.5 |
| hypothetical protein | DWX04_07230 | Not Available | Negative | 1734656 - 1736053 | 52267.1 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DWX04_07235 | Not Available | Negative | 1736181 - 1737233 | 39640.4 |
| peptide chain release factor n(5)-glutamine methyltransferase | DWX04_07240 | Not Available | Positive | 1737278 - 1738114 | 31673.2 |
| recx family transcriptional regulator | DWX04_07245 | Not Available | Positive | 1738116 - 1738601 | 18883.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

