Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine--trna ligase | DWX04_07150 | Not Available | Negative | 1715560 - 1717602 | 77726.9 |
| atp-binding protein | DWX04_07155 | Not Available | Negative | 1718058 - 1719596 | 56291.0 |
| duf4369 domain-containing protein | DWX04_07160 | Not Available | Negative | 1719601 - 1720668 | 40460.1 |
| tetratricopeptide repeat protein | DWX04_07165 | Not Available | Negative | 1720821 - 1722497 | 60893.8 |
| site-specific tyrosine recombinase xerd | DWX04_07170 | Not Available | Negative | 1722639 - 1723580 | 36180.1 |
| type ii 3-dehydroquinate dehydratase | DWX04_07175 | Not Available | Positive | 1723647 - 1724069 | 15686.0 |
| pyruvate kinase | DWX04_07180 | Not Available | Positive | 1724102 - 1725565 | 54241.6 |
| methyltransferase | DWX04_07185 | Not Available | Positive | 1725581 - 1726219 | 24411.5 |
| 30s ribosome-binding factor rbfa | DWX04_07190 | Not Available | Positive | 1726293 - 1726628 | 12972.9 |
| abc transporter permease | DWX04_07195 | Not Available | Positive | 1726638 - 1727876 | 45679.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

