Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is66 family transposase | DWX04_06950 | Not Available | Positive | 1658928 - 1660493 | 60572.4 |
| glycoside hydrolase family 97 protein | DWX04_06955 | Not Available | Negative | 1660627 - 1662555 | 72947.5 |
| response regulator | DWX04_06960 | Not Available | Negative | 1662688 - 1666914 | 161230.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWX04_06965 | Not Available | Positive | 1667202 - 1668737 | 57749.2 |
| alpha-l-arabinofuranosidase | DWX04_06970 | Not Available | Positive | 1668761 - 1670740 | 75344.1 |
| arylsulfatase | DWX04_06975 | Not Available | Negative | 1671542 - 1673104 | 57578.1 |
| trna 2-thiouridine(34) synthase mnma | DWX04_06980 | Not Available | Negative | 1673252 - 1674307 | 40158.7 |
| dna-binding protein | DWX04_06985 | Not Available | Negative | 1674310 - 1674780 | 18238.8 |
| duf4981 domain-containing protein | DWX04_06990 | Not Available | Negative | 1674952 - 1678281 | 125936.0 |
| hu family dna-binding protein | DWX04_06995 | Not Available | Negative | 1678374 - 1678646 | 9278.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

