Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonan acetylesterase | DWX04_06895 | Not Available | Negative | 1637753 - 1639309 | 57980.5 |
| glycoside hydrolase family 2 protein | DWX04_06905 | Not Available | Negative | 1641496 - 1644501 | 114525.0 |
| glycoside hydrolase family 2 protein | DWX04_06910 | Not Available | Negative | 1644707 - 1647562 | 106508.0 |
| duf4976 domain-containing protein | DWX04_06915 | Not Available | Negative | 1647576 - 1648970 | 51590.4 |
| oligogalacturonide lyase | DWX04_06920 | Not Available | Negative | 1648984 - 1650309 | 50032.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_06925 | Not Available | Negative | 1650530 - 1652833 | 86387.3 |
| tonb-dependent receptor | DWX04_06930 | Not Available | Negative | 1652858 - 1656226 | 124493.0 |
| recombinase | DWX04_06935 | Not Available | Negative | 1656593 - 1657774 | 45990.3 |
| hypothetical protein | DWX04_06940 | Not Available | Positive | 1658099 - 1658503 | 14911.8 |
| is66 family insertion sequence hypothetical protein | DWX04_06945 | Not Available | Positive | 1658491 - 1658841 | 13608.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

