Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_06770 | Not Available | Negative | 1607317 - 1607556 | 9221.45 |
| hypothetical protein | DWX04_06775 | Not Available | Negative | 1607559 - 1607765 | 7730.17 |
| hypothetical protein | DWX04_06780 | Not Available | Negative | 1607807 - 1608079 | 10242.3 |
| hypothetical protein | DWX04_06785 | Not Available | Negative | 1608116 - 1608334 | 8386.03 |
| is21 family transposase | DWX04_06790 | Not Available | Positive | 1608866 - 1610440 | 61949.2 |
| atp-binding protein | DWX04_06795 | Not Available | Positive | 1610437 - 1611219 | 30383.1 |
| mobilization protein | DWX04_06805 | Not Available | Positive | 1611553 - 1612503 | 36224.3 |
| susc/raga family tonb-linked outer membrane protein | DWX04_06820 | Not Available | Positive | 1614020 - 1617154 | 116027.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_06825 | Not Available | Positive | 1617184 - 1619043 | 69988.3 |
| hypothetical protein | DWX04_06830 | Not Available | Positive | 1619073 - 1619552 | 17816.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

