Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon protein tram | DWX04_06610 | Not Available | Positive | 1580319 - 1581275 | 35273.5 |
| hypothetical protein | DWX04_06615 | Not Available | Positive | 1581436 - 1582806 | 52582.0 |
| hypothetical protein | DWX04_06620 | Not Available | Negative | 1582789 - 1583475 | 26694.2 |
| conjugative transposon protein tran | DWX04_06625 | Not Available | Positive | 1583521 - 1584645 | 43069.2 |
| m23 family peptidase | DWX04_06630 | Not Available | Positive | 1584656 - 1585207 | 20640.0 |
| hth domain-containing protein | DWX04_06635 | Not Available | Positive | 1585204 - 1585434 | 9115.21 |
| hypothetical protein | DWX04_06640 | Not Available | Positive | 1586156 - 1586482 | 12003.7 |
| hypothetical protein | DWX04_06645 | Not Available | Negative | 1586786 - 1587091 | 10721.8 |
| hypothetical protein | DWX04_06650 | Not Available | Negative | 1587412 - 1587972 | 21215.1 |
| fic family protein | DWX04_06655 | Not Available | Negative | 1588128 - 1588973 | 32992.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

