Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional metallophosphatase/5'-nucleotidase | DWX04_06340 | Not Available | Negative | 1532456 - 1533298 | 31282.2 |
| 5'-nucleotidase | DWX04_06345 | Not Available | Negative | 1533310 - 1534089 | 27854.5 |
| 50s ribosomal protein l19 | DWX04_06350 | Not Available | Positive | 1534287 - 1534640 | 13130.2 |
| hypothetical protein | DWX04_06355 | Not Available | Positive | 1534795 - 1535013 | 7895.11 |
| hybrid sensor histidine kinase/response regulator | DWX04_06360 | Not Available | Negative | 1535095 - 1539381 | 162841.0 |
| l-rhamnose mutarotase | DWX04_06365 | Not Available | Negative | 1539462 - 1539776 | 12242.6 |
| glycoside hydrolase family 88 protein | DWX04_06370 | Not Available | Negative | 1539814 - 1541229 | 53275.8 |
| rhamnogalacturonan lyase | DWX04_06375 | Not Available | Negative | 1541242 - 1543149 | 70731.5 |
| hypothetical protein | DWX04_06385 | Not Available | Negative | 1544596 - 1546947 | 89558.1 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_06390 | Not Available | Negative | 1547139 - 1548620 | 56642.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

