Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_06290 | Not Available | Positive | 1522218 - 1522604 | 14711.7 |
| dde transposase | DWX04_06295 | Not Available | Positive | 1522585 - 1523562 | 38315.6 |
| Trna-met | Not Available | Not Available | Positive | 1523649 - 1523722 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 1523784 - 1523860 | Not Available |
| hypothetical protein | DWX04_06310 | Not Available | Positive | 1524064 - 1524450 | 15254.1 |
| yjgp/yjgq family permease | DWX04_06315 | Not Available | Positive | 1524534 - 1526432 | 72557.6 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DWX04_06320 | Not Available | Positive | 1526435 - 1527649 | 44949.4 |
| pyridoxal phosphate-dependent aminotransferase | DWX04_06325 | Not Available | Positive | 1527775 - 1528968 | 43093.5 |
| 4fe-4s dicluster domain-containing protein | DWX04_06330 | Not Available | Negative | 1529147 - 1529314 | 5717.65 |
| beta-n-acetylglucosaminidase | DWX04_06335 | Not Available | Negative | 1529432 - 1532410 | 111538.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

