Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_06235 | Not Available | Negative | 1499371 - 1500315 | 36145.1 |
| endo-polygalacturonase | DWX04_06240 | Not Available | Negative | 1500506 - 1501939 | 53684.5 |
| glycosyl hydrolase family 30 | DWX04_06245 | Not Available | Negative | 1501936 - 1503363 | 54720.1 |
| alpha-l-arabinofuranosidase | DWX04_06250 | Not Available | Negative | 1503391 - 1505874 | 93284.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_06255 | Not Available | Negative | 1506025 - 1508034 | 75203.8 |
| sigma-70 family rna polymerase sigma factor | DWX04_06265 | Not Available | Negative | 1511440 - 1511955 | 20705.7 |
| helix-turn-helix domain-containing protein | DWX04_06270 | Not Available | Negative | 1512156 - 1514969 | 106786.0 |
| six-hairpin glycosidase | DWX04_06275 | Not Available | Negative | 1515128 - 1517866 | 102910.0 |
| hypothetical protein | DWX04_06280 | Not Available | Negative | 1517956 - 1519557 | 60357.1 |
| beta-glucosidase | DWX04_06285 | Not Available | Positive | 1519693 - 1522059 | 87842.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

