Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine-hydrolyzing gmp synthase | DWX04_05880 | Not Available | Negative | 1402613 - 1404166 | 57646.1 |
| large-conductance mechanosensitive channel protein mscl | DWX04_05885 | Not Available | Negative | 1404403 - 1404843 | 15763.7 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DWX04_05890 | Not Available | Positive | 1404995 - 1406005 | 35961.1 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWX04_05895 | Not Available | Positive | 1406127 - 1407050 | 35704.2 |
| yegs/rv2252/bmru family lipid kinase | DWX04_05900 | Not Available | Positive | 1407056 - 1407985 | 35331.0 |
| 3-deoxy-8-phosphooctulonate synthase | DWX04_05905 | Not Available | Positive | 1408058 - 1408855 | 28835.3 |
| ferritin | DWX04_05910 | Not Available | Negative | 1409016 - 1409528 | 19740.4 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DWX04_05915 | Not Available | Negative | 1409561 - 1409713 | 5511.84 |
| crp/fnr family transcriptional regulator | DWX04_05920 | Not Available | Negative | 1409843 - 1410544 | 26605.4 |
| glutamine synthetase type iii | DWX04_05925 | Not Available | Negative | 1410706 - 1412895 | 82847.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

