Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mobilization protein | DWX04_04870 | Not Available | Negative | 1178681 - 1179622 | 36141.7 |
| plasmid mobilization relaxosome protein mobc | DWX04_04875 | Not Available | Negative | 1179612 - 1179920 | 12036.6 |
| hypothetical protein | DWX04_04880 | Not Available | Negative | 1180058 - 1181137 | 41391.5 |
| duf3987 domain-containing protein | DWX04_04885 | Not Available | Negative | 1181216 - 1182592 | 52791.2 |
| restriction endonuclease | DWX04_04895 | Not Available | Positive | 1183154 - 1184080 | 34537.3 |
| mobilization protein | DWX04_04900 | Not Available | Negative | 1184092 - 1184973 | 33475.4 |
| lipofamily protein | DWX04_04905 | Not Available | Negative | 1185238 - 1185603 | 13733.5 |
| site-specific integrase | DWX04_04910 | Not Available | Negative | 1185612 - 1186718 | 42951.0 |
| dna-binding protein | DWX04_04915 | Not Available | Negative | 1186803 - 1187708 | 35080.5 |
| nucleotidyl transferase abieii/abigii toxin family protein | DWX04_04920 | Not Available | Negative | 1189028 - 1190101 | 40693.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

