Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWX04_00145 | Not Available | Negative | 28915 - 31335 | 91833.4 |
| abc transporter atp-binding protein | DWX04_00150 | Not Available | Negative | 31335 - 32045 | 26407.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWX04_00155 | Not Available | Negative | 32059 - 33309 | 47799.6 |
| tolc family protein | DWX04_00160 | Not Available | Negative | 33315 - 34622 | 50663.9 |
| sigma-54-dependent fis family transcriptional regulator | DWX04_00165 | Not Available | Positive | 34954 - 36285 | 50275.0 |
| pas domain-containing protein | DWX04_00170 | Not Available | Positive | 36291 - 37613 | 50288.6 |
| gnat family n-acetyltransferase | DWX04_00175 | Not Available | Negative | 37740 - 39272 | 59325.0 |
| glutamine synthetase | DWX04_00180 | Not Available | Positive | 39478 - 40980 | 56007.0 |
| Trna-gly | Not Available | Not Available | Positive | 41101 - 41176 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 41189 - 41272 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

