Phocaeicola vulgatus strain AF18-14

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF18-14 is a Gram-positive, anaerobic rod-shaped bacterium primarily associated with the human host, Homo sapiens. This strain is characterized by a single cell arrangement and is non-motile, lacking the ability to move independently. Notably, it possesses flagella, which may play a role in its interaction with the host environment, despite its immobility. The strain is mesophilic, indicating that it thrives in moderate temperature ranges, which aligns with the typical conditions found within the human body. Phocaeicola vulgatus strain AF18-14 has a unique cellular structure, featuring two membranes and a singular replicon, which are characteristic traits of bacteria in its classification. Belonging to a free-living biotic relationship, this strain can exist independently outside of host organisms, yet it is predominantly found in association with humans. Its ecological role may include contributions to the human microbiome, where it could influence gut health and metabolic processes. The accession number for this strain is QRXI00000000.1, which allows for further exploration and study within microbiological databases. Understanding the traits and ecological significance of Phocaeicola vulgatus strain AF18-14 can provide insights into its potential impacts on human health and its role within the complex ecosystem of the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF18-14

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF18-14
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseDWX04_00145Not AvailableNegative28915 - 3133591833.4
abc transporter atp-binding proteinDWX04_00150Not AvailableNegative31335 - 3204526407.0
efflux rnd transporter periplasmic adaptor subunitDWX04_00155Not AvailableNegative32059 - 3330947799.6
tolc family proteinDWX04_00160Not AvailableNegative33315 - 3462250663.9
sigma-54-dependent fis family transcriptional regulatorDWX04_00165Not AvailablePositive34954 - 3628550275.0
pas domain-containing proteinDWX04_00170Not AvailablePositive36291 - 3761350288.6
gnat family n-acetyltransferaseDWX04_00175Not AvailableNegative37740 - 3927259325.0
glutamine synthetaseDWX04_00180Not AvailablePositive39478 - 4098056007.0
Trna-glyNot AvailableNot AvailablePositive41101 - 41176Not Available
Trna-leuNot AvailableNot AvailablePositive41189 - 41272Not Available

Displaying genes 91 – 100 of 4305 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.