Agathobacter rectalis strain AF18-16LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain AF18-16LB is a Gram-positive, anaerobic, non-motile rod-shaped bacterium that serves as a chemoheterotroph, deriving its energy from organic compounds. This strain is part of the diverse microbial community found within multiple habitats, including the human gut, where it has a specific relationship with Homo sapiens. The bacterium is characterized by a single replicon and a single membrane, indicating a relatively simple cellular structure. It does not form spores, which suggests that it may rely on other survival strategies in its anaerobic environment. The optimal growth temperature for A. rectalis strain AF18-16LB is 37°C, placing it in the mesophilic temperature range, which is typical for many microorganisms associated with warm-blooded hosts. One notable aspect of this strain is its role in the gut microbiome of humans, where it may contribute to various biological functions, including the fermentation of dietary fibers and the production of short-chain fatty acids. These metabolic activities are crucial for maintaining gut health and influencing host metabolism. As a free-living organism, A. rectalis strain AF18-16LB exemplifies the complexities of microbial interactions within the gastrointestinal tract, highlighting the importance of anaerobic bacteria in human health and the intricate balance of gut ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain AF18-16LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain AF18-16LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain AF18-16LB AF18-16LB.Scaf88, whole

Gene Summary

Adenine Count

993648 bp

Thymine Count

988231 bp

Guanine Count

685460 bp

Cytosine Count

698055 bp

Genome Length

3366162 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-phosphoglycerate dehydrogenaseDWX06_01490Not AvailableNegative301873 - 30303641227.6
3-phosphoserine/phosphohydroxythreonine transaminaseDWX06_01495Not AvailableNegative303036 - 30411840222.4
biosynthetic-type acetolactate synthase large subunitDWX06_01500Not AvailableNegative304120 - 30580861268.3
dihydroxy-acid dehydrataseDWX06_01505Not AvailableNegative305895 - 30757458873.6
3-isopropylmalate dehydrogenaseDWX06_01510Not AvailableNegative307689 - 30878939781.9
preprotein translocase subunit yajcDWX06_01515Not AvailableNegative309001 - 30931211329.9
trna guanosine(34) transglycosylase tgtDWX06_01520Not AvailableNegative309433 - 31057543001.7
glycoside hydrolase family 13 proteinDWX06_01525Not AvailableNegative310602 - 31237769364.2
chorismate synthaseDWX06_01530Not AvailablePositive313115 - 31421839204.8
abc transporter permeaseDWX06_01535Not AvailableNegative314327 - 31643279003.4

Displaying genes 351 – 360 of 3172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.