Agathobacter rectalis strain AF18-16LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter rectalis strain AF18-16LB is a Gram-positive, anaerobic, non-motile rod-shaped bacterium that serves as a chemoheterotroph, deriving its energy from organic compounds. This strain is part of the diverse microbial community found within multiple habitats, including the human gut, where it has a specific relationship with Homo sapiens. The bacterium is characterized by a single replicon and a single membrane, indicating a relatively simple cellular structure. It does not form spores, which suggests that it may rely on other survival strategies in its anaerobic environment. The optimal growth temperature for A. rectalis strain AF18-16LB is 37°C, placing it in the mesophilic temperature range, which is typical for many microorganisms associated with warm-blooded hosts. One notable aspect of this strain is its role in the gut microbiome of humans, where it may contribute to various biological functions, including the fermentation of dietary fibers and the production of short-chain fatty acids. These metabolic activities are crucial for maintaining gut health and influencing host metabolism. As a free-living organism, A. rectalis strain AF18-16LB exemplifies the complexities of microbial interactions within the gastrointestinal tract, highlighting the importance of anaerobic bacteria in human health and the intricate balance of gut ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter rectalis
Strainstrain AF18-16LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Agathobacter rectalis strain AF18-16LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Agathobacter rectalis strain AF18-16LB AF18-16LB.Scaf88, whole

Gene Summary

Adenine Count

993648 bp

Thymine Count

988231 bp

Guanine Count

685460 bp

Cytosine Count

698055 bp

Genome Length

3366162 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
capsular biosynthesis proteinDWX06_11935Not AvailableNegative2481589 - 248229026557.2
4fe-4s cluster-binding domain-containing proteinDWX06_11945Not AvailablePositive2483742 - 248403211065.2
d-alanyl-d-alanine carboxypeptidase family proteinDWX06_11955Not AvailableNegative2484410 - 248511427222.2
abc transporter permeaseDWX06_11960Not AvailableNegative2485115 - 248633846422.7
abc transporter atp-binding proteinDWX06_11965Not AvailableNegative2486335 - 248721332703.3
hypothetical proteinDWX06_11970Not AvailableNegative2487194 - 248796429811.3
rna polymerase sigma factorDWX06_11975Not AvailableNegative2487933 - 248846020631.8
ghkl domain-containing proteinDWX06_11980Not AvailablePositive2489172 - 24893034778.58
accessory regulator agrbDWX06_11985Not AvailablePositive2489330 - 248989621855.8
hypothetical proteinDWX06_11990Not AvailableNegative2489929 - 249031515106.9

Displaying genes 2321 – 2330 of 3172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.