Bacteroides clarus strain AF19-1AC

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides clarus strain AF19-1AC is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain has a single replicon and is associated with the human host, Homo sapiens. Its accession number is QRWP00000000.1, which serves as a reference for genetic and genomic studies. As an anaerobe, Bacteroides clarus AF19-1AC thrives in environments devoid of oxygen, which is typical for many members of the Bacteroides genus. These bacteria play a crucial role in the human gut microbiome, contributing to the breakdown of complex carbohydrates and the fermentation of dietary fibers, thereby influencing nutrient absorption and overall gut health. The presence of flagella may enhance its motility within the gut environment, potentially aiding in its colonization and interaction with the intestinal epithelium. The ecological role of Bacteroides clarus strain AF19-1AC in the human microbiome highlights its importance in maintaining gut homeostasis. Through its metabolic activities, it may support the host's health by producing short-chain fatty acids, which are beneficial for intestinal health and may have systemic anti-inflammatory effects. Understanding the specific traits and functions of this strain can contribute to insights into the complex dynamics of gut microbiota and its implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides clarus
Strainstrain AF19-1AC

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides clarus strain AF19-1AC
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides clarus strain AF19-1AC AF19-1AC.Scaf38, whole genome

Gene Summary

Adenine Count

1084523 bp

Thymine Count

1118870 bp

Guanine Count

931334 bp

Cytosine Count

910617 bp

Genome Length

4045484 bp

Protein-coding Genes

3256 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDWX38_00230Not AvailableNegative48697 - 4954833123.8
porinDWX38_00235Not AvailableNegative49586 - 5064140277.1
trna 2-thiouridine(34) synthase mnmaDWX38_00240Not AvailablePositive50848 - 5191540331.6
serine proteaseDWX38_00245Not AvailablePositive51954 - 5332450069.9
exodeoxyribonuclease vii large subunitDWX38_00250Not AvailablePositive53366 - 5461646369.6
exodeoxyribonuclease vii small subunitDWX38_00255Not AvailablePositive54621 - 548307899.45
rna polymerase sigma-70 factorDWX38_00260Not AvailablePositive54987 - 5547519681.3
fecr family proteinDWX38_00265Not AvailablePositive55555 - 5670043885.5
susc/raga family tonb-linked outer membrane proteinDWX38_00270Not AvailablePositive57213 - 60449120663.0
ragb/susd family nutrient uptake outer membrane proteinDWX38_00275Not AvailablePositive60471 - 6204859719.8

Displaying genes 71 – 80 of 3330 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

233 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 233 metabolites

Health Effects

No health effects information available for this bacterium.