Bacteroides clarus strain AF19-1AC

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides clarus strain AF19-1AC is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This strain is part of the Bacteroides genus, which is known for its role in the complex microbiota of various ecosystems, particularly within the gastrointestinal tracts of mammals. As an anaerobe, Bacteroides clarus strain AF19-1AC contributes to the fermentation processes that occur in anaerobic conditions, facilitating the breakdown of complex polysaccharides into simpler compounds. The Gram-negative nature of this strain suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interaction with the host environment and other microorganisms. The metabolic pathways utilized by Bacteroides clarus strain AF19-1AC are likely adapted to anaerobic conditions, enabling it to utilize various substrates for growth while producing short-chain fatty acids as metabolic byproducts. These fatty acids play a significant role in maintaining gut health and influencing host metabolism. Given its anaerobic requirement and Gram-negative characteristics, Bacteroides clarus strain AF19-1AC may occupy a niche within the microbiome that aids in nutrient recovery and energy production in environments where oxygen is limited. This ecological role highlights the importance of anaerobic bacteria in the overall functioning of microbial communities and their potential contributions to host health and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides clarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides clarus strain AF19-1AC

Accession NumberQRWP00000000.1

Gene Summary

Adenine Count

1084523 bp

Thymine Count

1118870 bp

Guanine Count

931334 bp

Cytosine Count

910617 bp

Genome Length

4045484 bp

Protein-coding Genes

3256 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Structural proteinDWX38_07375Not Available-1819830 - 182101142097.4
hypothetical proteinDWX38_07380Not Available-1821022 - 18212348096.79
hypothetical proteinDWX38_07385Not Available-1821246 - 182153911213.7
hypothetical proteinDWX38_07390Not Available-1821523 - 182195716665.8
Putative capsid and scaffold proteinDWX38_07395Not Available-1821995 - 182239614956.9
hypothetical proteinDWX38_07400Not Available-1822368 - 182267011197.2
hypothetical proteinDWX38_07405Not Available-1822683 - 182363335435.6
Capsid maturation proteaseDWX38_07410Not Available-1823817 - 182484838589.1
helix-turn-helix domain-containing proteinDWX38_07415Not Available+1825024 - 182547016908.6
Large terminaseDWX38_07420Not Available+1825467 - 182699058813.0

Displaying genes 1 – 10 of 3330 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

233 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 233 metabolites