Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWX60_05045 | Not Available | Positive | 1269159 - 1272512 | 124318.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_05050 | Not Available | Positive | 1272526 - 1274067 | 59338.3 |
| duf4982 domain-containing protein | DWX60_05055 | Not Available | Positive | 1274166 - 1276613 | 92773.4 |
| glycoside hydrolase | DWX60_05060 | Not Available | Positive | 1276610 - 1278691 | 80566.9 |
| glycoside hydrolase family 2 protein | DWX60_05065 | Not Available | Positive | 1278754 - 1281432 | 101326.0 |
| arylsulfatase | DWX60_05070 | Not Available | Positive | 1281547 - 1283145 | 60871.1 |
| duf1566 domain-containing protein | DWX60_05075 | Not Available | Positive | 1283427 - 1284977 | 54947.7 |
| hypothetical protein | DWX60_05080 | Not Available | Negative | 1285010 - 1285219 | 7826.78 |
| hypothetical protein | DWX60_05090 | Not Available | Positive | 1285701 - 1285946 | 9426.46 |
| dead/deah box helicase | DWX60_05095 | Not Available | Negative | 1286022 - 1287326 | 48294.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

