Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | DWX60_04995 | Not Available | Positive | 1258718 - 1260028 | 48593.3 |
| hybrid sensor histidine kinase/response regulator | DWX60_05000 | Not Available | Positive | 1260042 - 1262609 | 96900.3 |
| sigma-54-dependent fis family transcriptional regulator | DWX60_05005 | Not Available | Positive | 1262711 - 1264093 | 51219.5 |
| hypothetical protein | DWX60_05010 | Not Available | Positive | 1264378 - 1264683 | 10782.8 |
| rna pseudouridine synthase | DWX60_05015 | Not Available | Negative | 1264748 - 1265419 | 25519.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DWX60_05020 | Not Available | Negative | 1265421 - 1266167 | 25964.4 |
| tetr/acrr family transcriptional regulator | DWX60_05025 | Not Available | Negative | 1266199 - 1266798 | 22662.3 |
| Trna-met | Not Available | Not Available | Positive | 1267030 - 1267105 | Not Available |
| rna polymerase sigma-70 factor | DWX60_05035 | Not Available | Positive | 1267426 - 1268016 | 23832.7 |
| fecr family protein | DWX60_05040 | Not Available | Positive | 1268071 - 1269006 | 36575.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

