Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-c crispr-associated protein cas5 | DWX60_04885 | Not Available | Negative | 1225429 - 1226121 | 27315.8 |
| hypothetical protein | DWX60_04890 | Not Available | Negative | 1226123 - 1226983 | 33172.4 |
| crispr-associated helicase cas3' | DWX60_04895 | Not Available | Negative | 1226994 - 1229219 | 84398.2 |
| histidine--trna ligase | DWX60_04900 | Not Available | Negative | 1229552 - 1230916 | 50361.8 |
| sugar abc transporter substrate-binding protein | DWX60_04905 | Not Available | Negative | 1231075 - 1231923 | 31247.0 |
| multidrug dmt transporter permease | DWX60_04910 | Not Available | Negative | 1231931 - 1232947 | 35979.8 |
| fucose isomerase | DWX60_04915 | Not Available | Negative | 1232960 - 1234384 | 52395.0 |
| glycerol kinase | DWX60_04920 | Not Available | Negative | 1234418 - 1235914 | 55175.4 |
| transketolase family protein | DWX60_04925 | Not Available | Negative | 1235940 - 1236878 | 33608.6 |
| transketolase | DWX60_04930 | Not Available | Negative | 1236868 - 1237713 | 31441.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

