Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general stress protein | DWX60_04825 | Not Available | Negative | 1214315 - 1214995 | 26136.8 |
| gfo/idh/moca family oxidoreductase | DWX60_04840 | Not Available | Positive | 1216229 - 1217644 | 53460.8 |
| carbonic anhydrase | DWX60_04845 | Not Available | Negative | 1217768 - 1218307 | 19937.5 |
| crp/fnr family transcriptional regulator | DWX60_04850 | Not Available | Negative | 1218498 - 1219082 | 22223.6 |
| mate family efflux transporter | DWX60_04855 | Not Available | Negative | 1219118 - 1220470 | 49572.5 |
| crispr-associated endonuclease cas2 | DWX60_04860 | Not Available | Negative | 1220844 - 1221134 | 11045.4 |
| type i-c crispr-associated endonuclease cas1 | DWX60_04865 | Not Available | Negative | 1221144 - 1222166 | 38708.3 |
| crispr-associated protein cas4 | DWX60_04870 | Not Available | Negative | 1222163 - 1222828 | 25746.0 |
| type i-c crispr-associated protein cas7/csd2 | DWX60_04875 | Not Available | Negative | 1222838 - 1223689 | 31352.4 |
| type i-c crispr-associated protein cas8c/csd1 | DWX60_04880 | Not Available | Negative | 1223711 - 1225432 | 65396.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

