Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formiminotransferase-cyclodeaminase | DWX60_04775 | Not Available | Positive | 1206856 - 1206969 | 4348.15 |
| glutamate formimidoyltransferase | DWX60_04780 | Not Available | Positive | 1206917 - 1207819 | 33357.4 |
| gxxexxy protein | DWX60_04785 | Not Available | Positive | 1207837 - 1208223 | 15150.3 |
| imidazolonepropionase | DWX60_04790 | Not Available | Positive | 1208270 - 1209514 | 44903.3 |
| methenyltetrahydrofolate cyclohydrolase | DWX60_04795 | Not Available | Positive | 1209535 - 1210158 | 22967.8 |
| histidine ammonia-lyase | DWX60_04800 | Not Available | Positive | 1210193 - 1211689 | 55180.9 |
| nudix domain-containing protein | DWX60_04805 | Not Available | Positive | 1211808 - 1212308 | 18956.2 |
| hypothetical protein | DWX60_04810 | Not Available | Negative | 1213035 - 1213241 | 7690.22 |
| glutamine amidotransferase | DWX60_04815 | Not Available | Negative | 1213345 - 1213962 | 22787.4 |
| duf3795 domain-containing protein | DWX60_04820 | Not Available | Negative | 1213965 - 1214309 | 13108.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

