Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine decarboxylase | DWX60_04725 | Not Available | Positive | 1191285 - 1191893 | 22164.6 |
| paai family thioesterase | DWX60_04730 | Not Available | Negative | 1191973 - 1192383 | 14751.8 |
| duf2027 domain-containing protein | DWX60_04735 | Not Available | Negative | 1192411 - 1193499 | 41096.4 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DWX60_04740 | Not Available | Positive | 1193564 - 1194781 | 46224.2 |
| n-6 dna methylase | DWX60_04745 | Not Available | Positive | 1195080 - 1197056 | 74594.1 |
| restriction endonuclease subunit s | DWX60_04750 | Not Available | Positive | 1197065 - 1198321 | 46982.9 |
| duf1016 domain-containing protein | DWX60_04755 | Not Available | Positive | 1198343 - 1199440 | 42224.4 |
| type i restriction endonuclease subunit r | DWX60_04760 | Not Available | Positive | 1199508 - 1203533 | 153978.0 |
| wyl domain-containing protein | DWX60_04765 | Not Available | Positive | 1203561 - 1204592 | 39924.6 |
| urocanate hydratase | DWX60_04770 | Not Available | Positive | 1204837 - 1206834 | 74543.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

