Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DWX60_04625 | Not Available | Negative | 1159221 - 1160207 | 38650.5 |
| rna polymerase sigma-70 factor | DWX60_04630 | Not Available | Negative | 1160337 - 1160918 | 22722.7 |
| abc transporter atp-binding protein | DWX60_04635 | Not Available | Negative | 1160958 - 1162592 | 61961.7 |
| putative transporter | DWX60_04640 | Not Available | Negative | 1162708 - 1164378 | 60144.9 |
| methylmalonyl-coa mutase small subunit | DWX60_04645 | Not Available | Positive | 1164664 - 1166574 | 70522.5 |
| methylmalonyl-coa mutase | DWX60_04650 | Not Available | Positive | 1166584 - 1168734 | 79111.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_04655 | Not Available | Negative | 1169057 - 1170547 | 55874.7 |
| tonb-dependent receptor | DWX60_04660 | Not Available | Negative | 1170561 - 1173806 | 119622.0 |
| duf1232 domain-containing protein | DWX60_04665 | Not Available | Negative | 1174246 - 1174608 | 13960.1 |
| tonb-dependent receptor | DWX60_04670 | Not Available | Negative | 1174753 - 1177077 | 88534.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

