Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX60_04575 | Not Available | Negative | 1138371 - 1138994 | 23177.9 |
| rna degradosome polyphosphate kinase | DWX60_04580 | Not Available | Negative | 1139340 - 1141394 | 80461.5 |
| metallophosphoesterase | DWX60_04585 | Not Available | Positive | 1141452 - 1141949 | 18707.5 |
| dtdp-glucose 4,6-dehydratase | DWX60_04590 | Not Available | Positive | 1141998 - 1143137 | 43738.0 |
| tonb-dependent receptor | DWX60_04595 | Not Available | Positive | 1143608 - 1146700 | 115070.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_04600 | Not Available | Positive | 1146713 - 1148530 | 68259.8 |
| duf4981 domain-containing protein | DWX60_04605 | Not Available | Negative | 1148717 - 1151947 | 122500.0 |
| glycoside hydrolase | DWX60_04610 | Not Available | Negative | 1152003 - 1154072 | 78010.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_04615 | Not Available | Negative | 1154104 - 1155639 | 58932.3 |
| susc/raga family tonb-linked outer membrane protein | DWX60_04620 | Not Available | Negative | 1155660 - 1159076 | 126386.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

