Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | DWX60_00405 | Not Available | Negative | 86278 - 86985 | 26653.3 |
| undecaprenyl-diphosphatase | DWX60_00410 | Not Available | Negative | 86990 - 87790 | 28480.0 |
| duf3098 domain-containing protein | DWX60_00415 | Not Available | Negative | 87828 - 88073 | 9145.44 |
| abc transporter permease | DWX60_00420 | Not Available | Negative | 88086 - 88955 | 32622.6 |
| class i sam-dependent methyltransferase | DWX60_00425 | Not Available | Negative | 88958 - 89824 | 33272.9 |
| pspc domain-containing protein | DWX60_00430 | Not Available | Positive | 89992 - 90228 | 9155.18 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWX60_00435 | Not Available | Negative | 90238 - 90639 | 15118.3 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DWX60_00440 | Not Available | Negative | 90639 - 92009 | 51936.9 |
| hypothetical protein | DWX60_00445 | Not Available | Positive | 92347 - 92697 | 13527.6 |
| acetyl-coa hydrolase/transferase family protein | DWX60_00450 | Not Available | Positive | 92735 - 94228 | 54010.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

