Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | DWX60_04465 | Not Available | Positive | 1115742 - 1117112 | 49490.1 |
| cytidylate kinase-like family protein | DWX60_04470 | Not Available | Positive | 1117166 - 1117795 | 23564.2 |
| is1595 family transposase | DWX60_04480 | Not Available | Positive | 1119574 - 1120530 | 37094.2 |
| kila-n domain-containing protein | DWX60_04485 | Not Available | Positive | 1120520 - 1121437 | 35598.7 |
| hypothetical protein | DWX60_04490 | Not Available | Negative | 1121477 - 1121848 | 13654.3 |
| duf3244 domain-containing protein | DWX60_04500 | Not Available | Positive | 1122886 - 1123290 | 14848.9 |
| hypothetical protein | DWX60_04505 | Not Available | Positive | 1123434 - 1124360 | 35822.5 |
| peptidase c39 | DWX60_04510 | Not Available | Positive | 1124481 - 1125068 | 23231.6 |
| tonb-dependent receptor | DWX60_04515 | Not Available | Negative | 1125087 - 1127393 | 87052.3 |
| radical sam protein | DWX60_04520 | Not Available | Negative | 1127597 - 1128898 | 50254.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

