Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein nlpe | DWX60_04415 | Not Available | Positive | 1105972 - 1106400 | 15888.7 |
| blai/meci/copy family transcriptional regulator | DWX60_04420 | Not Available | Positive | 1106586 - 1106951 | 14087.0 |
| tonb family protein | DWX60_04425 | Not Available | Positive | 1106974 - 1108824 | 69540.6 |
| mrp family atp-binding protein | DWX60_04430 | Not Available | Negative | 1108892 - 1109992 | 39559.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DWX60_04435 | Not Available | Negative | 1110003 - 1110761 | 29773.6 |
| duf975 family protein | DWX60_04440 | Not Available | Negative | 1110884 - 1111510 | 23245.0 |
| branched-chain amino acid aminotransferase | DWX60_04445 | Not Available | Negative | 1111528 - 1112547 | 37876.2 |
| exodeoxyribonuclease vii small subunit | DWX60_04450 | Not Available | Negative | 1112728 - 1112931 | 7823.46 |
| exodeoxyribonuclease vii large subunit | DWX60_04455 | Not Available | Negative | 1112940 - 1114247 | 49535.8 |
| serine protease | DWX60_04460 | Not Available | Negative | 1114247 - 1115620 | 49946.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

