Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arabinan endo-1,5-alpha-l-arabinosidase | DWX60_03910 | Not Available | Positive | 967300 - 969183 | 70262.1 |
| cysteine--trna ligase | DWX60_03915 | Not Available | Positive | 969558 - 971039 | 56319.0 |
| aromatic amino acid lyase | DWX60_03920 | Not Available | Positive | 971227 - 972798 | 59097.5 |
| 3-oxoacyl-acp reductase fabg | DWX60_03925 | Not Available | Positive | 972795 - 973523 | 26466.9 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DWX60_03930 | Not Available | Positive | 973531 - 974760 | 44241.6 |
| acyl carrier protein | DWX60_03935 | Not Available | Positive | 974782 - 975033 | 9584.45 |
| acyltransferase | DWX60_03940 | Not Available | Positive | 975033 - 975917 | 34477.0 |
| methyltransferase domain-containing protein | DWX60_03945 | Not Available | Positive | 975931 - 977001 | 40576.7 |
| hydroxymyristoyl-acp dehydratase | DWX60_03950 | Not Available | Positive | 976998 - 977435 | 16452.2 |
| acyl-coa thioesterase | DWX60_03955 | Not Available | Positive | 977432 - 977875 | 17322.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

