Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DWX60_03860 | Not Available | Positive | 945859 - 946329 | 18238.8 |
| trna 2-thiouridine(34) synthase mnma | DWX60_03865 | Not Available | Positive | 946332 - 947387 | 40166.7 |
| arylsulfatase | DWX60_03870 | Not Available | Positive | 947535 - 949097 | 57625.2 |
| alpha-l-arabinofuranosidase | DWX60_03875 | Not Available | Negative | 949899 - 951878 | 75354.2 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWX60_03880 | Not Available | Negative | 951902 - 953437 | 57639.9 |
| response regulator | DWX60_03885 | Not Available | Positive | 953717 - 957943 | 161176.0 |
| glycoside hydrolase family 97 protein | DWX60_03890 | Not Available | Positive | 958076 - 960004 | 72974.5 |
| tonb-dependent receptor | DWX60_03895 | Not Available | Positive | 960443 - 963652 | 118845.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_03900 | Not Available | Positive | 963672 - 965423 | 66225.7 |
| hypothetical protein | DWX60_03905 | Not Available | Positive | 965448 - 967226 | 64403.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

