Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine c-acetyltransferase | DWX60_03810 | Not Available | Negative | 930082 - 931272 | 43568.4 |
| nad-dependent epimerase/dehydratase family protein | DWX60_03815 | Not Available | Positive | 931443 - 932396 | 35269.3 |
| sugar kinase | DWX60_03820 | Not Available | Positive | 932539 - 933603 | 38958.5 |
| protein translocase subunit secdf | DWX60_03825 | Not Available | Negative | 933868 - 936855 | 109234.0 |
| m3 family peptidase | DWX60_03830 | Not Available | Negative | 937034 - 939121 | 78974.4 |
| endonuclease | DWX60_03835 | Not Available | Negative | 939148 - 940227 | 40291.9 |
| rhomboid family intramembrane serine protease | DWX60_03840 | Not Available | Negative | 940231 - 941124 | 33974.6 |
| rhomboid family intramembrane serine protease | DWX60_03845 | Not Available | Negative | 941105 - 941782 | 25332.5 |
| hu family dna-binding protein | DWX60_03850 | Not Available | Positive | 941993 - 942265 | 9278.25 |
| duf4981 domain-containing protein | DWX60_03855 | Not Available | Positive | 942358 - 945687 | 125950.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

