Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase | DWX60_03660 | Not Available | Negative | 893014 - 893844 | 31878.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWX60_03665 | Not Available | Positive | 893935 - 895740 | 70271.4 |
| nad/nadp octopine/nopaline dehydrogenase | DWX60_03670 | Not Available | Positive | 895737 - 896837 | 41172.9 |
| licd family protein | DWX60_03675 | Not Available | Positive | 896841 - 897638 | 31703.4 |
| hemolysin activation protein | DWX60_03680 | Not Available | Positive | 897652 - 898668 | 40425.5 |
| glycosyltransferase | DWX60_03685 | Not Available | Positive | 898641 - 899756 | 42910.4 |
| glycosyltransferase | DWX60_03690 | Not Available | Positive | 899769 - 901031 | 47697.5 |
| glycosyltransferase | DWX60_03695 | Not Available | Positive | 901024 - 901770 | 28692.4 |
| hypothetical protein | DWX60_03700 | Not Available | Negative | 901796 - 904288 | 93034.4 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DWX60_03705 | Not Available | Positive | 904373 - 905068 | 25496.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

