Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase | DWX60_03610 | Not Available | Negative | 879788 - 880426 | 24383.5 |
| pyruvate kinase | DWX60_03615 | Not Available | Negative | 880442 - 881905 | 54241.6 |
| type ii 3-dehydroquinate dehydratase | DWX60_03620 | Not Available | Negative | 881938 - 882360 | 15666.9 |
| site-specific tyrosine recombinase xerd | DWX60_03625 | Not Available | Positive | 882427 - 883368 | 36180.1 |
| tetratricopeptide repeat protein | DWX60_03630 | Not Available | Positive | 883510 - 885186 | 60893.8 |
| duf4369 domain-containing protein | DWX60_03635 | Not Available | Positive | 885340 - 886407 | 40488.1 |
| atp-binding protein | DWX60_03640 | Not Available | Positive | 886412 - 887950 | 56291.0 |
| methionine--trna ligase | DWX60_03645 | Not Available | Positive | 888406 - 890448 | 77707.9 |
| lipopolysaccharide biosynthesis protein | DWX60_03650 | Not Available | Positive | 890530 - 891966 | 53539.4 |
| acyltransferase | DWX60_03655 | Not Available | Positive | 891966 - 892991 | 39502.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

