Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DWX60_03560 | Not Available | Positive | 868774 - 869826 | 39628.4 |
| hypothetical protein | DWX60_03565 | Not Available | Positive | 869954 - 871351 | 52280.1 |
| isoprenyl transferase | DWX60_03570 | Not Available | Positive | 871385 - 872116 | 28066.4 |
| outer membrane protein assembly factor bama | DWX60_03575 | Not Available | Positive | 872128 - 874770 | 100717.0 |
| omph family outer membrane protein | DWX60_03580 | Not Available | Positive | 874791 - 875306 | 18937.6 |
| omph family outer membrane protein | DWX60_03585 | Not Available | Positive | 875364 - 875867 | 19260.2 |
| glutamate racemase | DWX60_03590 | Not Available | Positive | 875970 - 876815 | 31392.0 |
| pyridoxamine kinase | DWX60_03595 | Not Available | Positive | 876872 - 877744 | 32647.3 |
| abc transporter permease | DWX60_03600 | Not Available | Negative | 878131 - 879369 | 45679.9 |
| 30s ribosome-binding factor rbfa | DWX60_03605 | Not Available | Negative | 879379 - 879714 | 12972.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

