Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dde transposase | DWX60_00300 | Not Available | Positive | 65385 - 66389 | 39004.1 |
| Trna-gln | Not Available | Not Available | Positive | 66508 - 66578 | Not Available |
| peptidase s41 | DWX60_00310 | Not Available | Positive | 66713 - 69967 | 121930.0 |
| tyrosine--trna ligase | DWX60_00315 | Not Available | Negative | 70092 - 71384 | 48043.5 |
| hydrolase tatd | DWX60_00320 | Not Available | Negative | 71464 - 72093 | 24008.2 |
| membrane protein insertion efficiency factor yidd | DWX60_00325 | Not Available | Negative | 72108 - 72329 | 8364.46 |
| ribonuclease p protein component | DWX60_00330 | Not Available | Negative | 72326 - 72718 | 15158.8 |
| uroporphyrinogen-iii synthase | DWX60_00335 | Not Available | Negative | 72821 - 73570 | 28649.6 |
| duf4271 domain-containing protein | DWX60_00340 | Not Available | Negative | 73575 - 74387 | 31567.1 |
| tigr00730 family rossman fold protein | DWX60_00345 | Not Available | Negative | 74384 - 74971 | 21517.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

