Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cys-trna(pro) deacylase | DWX60_02905 | Not Available | Negative | 740255 - 740740 | 17802.8 |
| excinuclease abc subunit uvra | DWX60_02910 | Not Available | Negative | 740755 - 743583 | 105939.0 |
| lysm peptidoglycan-binding domain-containing protein | DWX60_02915 | Not Available | Positive | 743738 - 745546 | 68558.0 |
| port family protein | DWX60_02920 | Not Available | Positive | 745546 - 746229 | 25699.9 |
| duf4293 family protein | DWX60_02925 | Not Available | Negative | 746313 - 746765 | 16883.5 |
| rna polymerase rpb6 | DWX60_02930 | Not Available | Negative | 747014 - 747349 | 12965.3 |
| outer membrane protein assembly factor bamd | DWX60_02935 | Not Available | Negative | 747366 - 748202 | 32450.3 |
| excinuclease abc subunit uvrb | DWX60_02940 | Not Available | Positive | 748368 - 750401 | 77671.6 |
| porin | DWX60_02945 | Not Available | Negative | 750568 - 751581 | 38665.0 |
| yigz family protein | DWX60_02950 | Not Available | Negative | 751772 - 752374 | 22823.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

