Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DWX60_02600 | Not Available | Positive | 668619 - 669173 | 21477.1 |
| hypothetical protein | DWX60_02605 | Not Available | Positive | 669222 - 669506 | 11191.4 |
| tonb-dependent receptor | DWX60_02610 | Not Available | Positive | 669541 - 672741 | 118231.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_02615 | Not Available | Positive | 672766 - 674736 | 73830.3 |
| methylmalonyl-coa carboxyltransferase | DWX60_02620 | Not Available | Positive | 674791 - 675198 | 14942.1 |
| putative transporter | DWX60_02625 | Not Available | Positive | 675324 - 677012 | 60888.9 |
| hypothetical protein | DWX60_02630 | Not Available | Positive | 677032 - 677589 | 21451.8 |
| hypothetical protein | DWX60_02635 | Not Available | Positive | 677616 - 677825 | 7700.39 |
| ribonucleoside-diphosphate reductase subunit alpha | DWX60_02640 | Not Available | Positive | 678228 - 680747 | 95735.6 |
| ribonucleotide-diphosphate reductase subunit beta | DWX60_02645 | Not Available | Positive | 680910 - 681959 | 41347.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

