Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX60_02550 | Not Available | Negative | 646850 - 647074 | 8547.9 |
| glycoside hydrolase family 2 | DWX60_02555 | Not Available | Positive | 647149 - 649773 | 98317.5 |
| hybrid sensor histidine kinase/response regulator | DWX60_02560 | Not Available | Positive | 649899 - 654302 | 168817.0 |
| sugar phosphate isomerase/epimerase | DWX60_02565 | Not Available | Positive | 654468 - 655352 | 33290.8 |
| tonb-dependent receptor | DWX60_02570 | Not Available | Positive | 655382 - 658837 | 126230.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_02575 | Not Available | Positive | 658858 - 660867 | 75993.3 |
| polysaccharide lyase | DWX60_02580 | Not Available | Positive | 661036 - 662769 | 64377.8 |
| duf3826 domain-containing protein | DWX60_02585 | Not Available | Positive | 662794 - 663462 | 25071.4 |
| polysaccharide lyase | DWX60_02590 | Not Available | Positive | 663662 - 665344 | 61353.9 |
| pectate lyase | DWX60_02595 | Not Available | Positive | 665346 - 668432 | 115932.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

