Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphogluconolactonase | DWX60_02330 | Not Available | Positive | 599589 - 600293 | 26386.3 |
| cytochrome d ubiquinol oxidase subunit ii | DWX60_02335 | Not Available | Negative | 600588 - 601733 | 42812.5 |
| cytochrome ubiquinol oxidase subunit i | DWX60_02340 | Not Available | Negative | 601888 - 603390 | 55144.0 |
| duf4492 domain-containing protein | DWX60_02345 | Not Available | Negative | 603414 - 603632 | 8685.8 |
| tolc family protein | DWX60_02350 | Not Available | Positive | 603786 - 605129 | 50306.4 |
| efflux rnd transporter periplasmic adaptor subunit | DWX60_02355 | Not Available | Positive | 605154 - 606377 | 44030.8 |
| abc transporter atp-binding protein | DWX60_02360 | Not Available | Positive | 606419 - 607162 | 27195.8 |
| abc transporter permease | DWX60_02365 | Not Available | Positive | 607181 - 608401 | 44142.1 |
| histidine kinase | DWX60_02370 | Not Available | Positive | 608595 - 609650 | 40184.1 |
| dna-binding response regulator | DWX60_02375 | Not Available | Positive | 609647 - 610372 | 27838.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

