Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DWX60_02170 | Not Available | Negative | 562576 - 564789 | 84511.3 |
| duf4301 family protein | DWX60_02175 | Not Available | Positive | 564933 - 566450 | 56797.3 |
| n-glycanase | DWX60_02180 | Not Available | Positive | 566570 - 567820 | 46706.9 |
| dna alkylation repair protein | DWX60_02185 | Not Available | Negative | 567925 - 568641 | 28304.2 |
| gnat family n-acetyltransferase | DWX60_02190 | Not Available | Negative | 568662 - 569159 | 19339.5 |
| padr family transcriptional regulator | DWX60_02195 | Not Available | Positive | 569336 - 569662 | 12456.0 |
| pspc domain-containing protein | DWX60_02200 | Not Available | Positive | 569675 - 570721 | 38246.6 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DWX60_02205 | Not Available | Positive | 570819 - 571988 | 42895.6 |
| rhomboid family intramembrane serine protease | DWX60_02210 | Not Available | Negative | 572448 - 573113 | 25272.1 |
| 4-alpha-glucanotransferase | DWX60_02215 | Not Available | Positive | 573294 - 575234 | 74877.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

