Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clostripain | DWX60_02065 | Not Available | Positive | 534820 - 536082 | 46800.5 |
| hypothetical protein | DWX60_02070 | Not Available | Negative | 536066 - 536464 | 15058.6 |
| divalent metal cation transporter | DWX60_02075 | Not Available | Positive | 536567 - 537820 | 45760.0 |
| potassium/proton antiporter | DWX60_02080 | Not Available | Negative | 537897 - 539345 | 52867.7 |
| mate family efflux transporter | DWX60_02085 | Not Available | Negative | 539342 - 540694 | 49414.7 |
| had family hydrolase | DWX60_02090 | Not Available | Positive | 540784 - 541434 | 24626.3 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DWX60_02095 | Not Available | Positive | 541487 - 542308 | 29550.9 |
| mfs transporter | DWX60_02100 | Not Available | Positive | 542323 - 543489 | 43903.9 |
| energy-dependent translational throttle protein etta | DWX60_02105 | Not Available | Positive | 543527 - 545215 | 63671.1 |
| tonb-dependent receptor | DWX60_02115 | Not Available | Positive | 549400 - 551997 | 95815.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

