Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| six-hairpin glycosidase | DWX60_02015 | Not Available | Positive | 516924 - 520235 | 126843.0 |
| hydrolase | DWX60_02020 | Not Available | Positive | 520287 - 523043 | 104277.0 |
| glycoside hydrolase family 28 protein | DWX60_02025 | Not Available | Positive | 523110 - 524441 | 49454.7 |
| hypothetical protein | DWX60_02030 | Not Available | Positive | 524450 - 525790 | 49851.6 |
| hybrid sensor histidine kinase/response regulator | DWX60_02035 | Not Available | Negative | 526253 - 529390 | 119574.0 |
| helix-turn-helix domain-containing protein | DWX60_02040 | Not Available | Positive | 529728 - 530564 | 32666.4 |
| duf417 domain-containing protein | DWX60_02045 | Not Available | Positive | 530657 - 531247 | 21267.4 |
| do family serine endopeptidase | DWX60_02050 | Not Available | Positive | 531569 - 533092 | 53839.6 |
| rna polymerase sigma factor rpod/siga | DWX60_02055 | Not Available | Positive | 533332 - 534192 | 32805.3 |
| hypothetical protein | DWX60_02060 | Not Available | Positive | 534414 - 534809 | 15100.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

