Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| damage-inducible protein d | DWX60_00145 | Not Available | Negative | 32975 - 33523 | 20574.8 |
| hypothetical protein | DWX60_00155 | Not Available | Positive | 34308 - 35540 | 44169.1 |
| endoribonuclease ybey | DWX60_00160 | Not Available | Positive | 35585 - 36001 | 15838.9 |
| hypothetical protein | DWX60_00165 | Not Available | Positive | 36228 - 36761 | 20207.4 |
| flotillin family protein | DWX60_00170 | Not Available | Positive | 36787 - 38487 | 62454.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DWX60_00175 | Not Available | Positive | 38634 - 40505 | 69615.1 |
| adenine phosphoribosyltransferase | DWX60_00180 | Not Available | Positive | 40565 - 41089 | 19189.4 |
| hypothetical protein | DWX60_00185 | Not Available | Negative | 41092 - 41316 | 8505.38 |
| excinuclease abc subunit uvrc | DWX60_00190 | Not Available | Positive | 41319 - 43139 | 69950.8 |
| d-tyrosyl-trna(tyr) deacylase | DWX60_00195 | Not Available | Positive | 43297 - 43749 | 16476.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

