Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional repressor | DWX60_01760 | Not Available | Negative | 461816 - 462307 | 19166.0 |
| dna alkylation repair protein | DWX60_01765 | Not Available | Negative | 462338 - 463006 | 25716.3 |
| dihydrofolate reductase | DWX60_01770 | Not Available | Negative | 463015 - 465027 | 76594.1 |
| arac family transcriptional regulator | DWX60_01775 | Not Available | Negative | 465133 - 465600 | 18149.8 |
| dna helicase recq | DWX60_01780 | Not Available | Positive | 465932 - 467749 | 69144.0 |
| tetratricopeptide repeat protein | DWX60_01785 | Not Available | Negative | 467847 - 468701 | 32582.4 |
| peptide-methionine (s)-s-oxide reductase | DWX60_01790 | Not Available | Positive | 468819 - 469304 | 18625.0 |
| ahpc/tsa family protein | DWX60_01795 | Not Available | Negative | 469373 - 470518 | 42891.5 |
| 3-isopropylmalate dehydrogenase | DWX60_01800 | Not Available | Negative | 470650 - 471711 | 39089.9 |
| 2-isopropylmalate synthase | DWX60_01805 | Not Available | Negative | 471805 - 473325 | 56824.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

