Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| collagenase-like protease | DWX60_01645 | Not Available | Negative | 424751 - 426580 | 69841.9 |
| homoserine o-succinyltransferase | DWX60_01650 | Not Available | Negative | 426577 - 427494 | 35760.9 |
| gfo/idh/moca family oxidoreductase | DWX60_01655 | Not Available | Positive | 427877 - 429439 | 58071.8 |
| nitroreductase family protein | DWX60_01665 | Not Available | Negative | 429808 - 430536 | 28041.5 |
| type 1 glutamine amidotransferase domain-containing protein | DWX60_01670 | Not Available | Negative | 430558 - 431253 | 25803.2 |
| tolc family protein | DWX60_01675 | Not Available | Negative | 431394 - 432563 | 43876.7 |
| acrb/acrd/acrf family protein | DWX60_01680 | Not Available | Negative | 432574 - 435657 | 112510.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWX60_01685 | Not Available | Negative | 435669 - 436928 | 45795.5 |
| hypothetical protein | DWX60_01690 | Not Available | Negative | 437023 - 437526 | 19121.3 |
| m13 family peptidase | DWX60_01695 | Not Available | Negative | 437556 - 439568 | 74903.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

