Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | DWX60_01530 | Not Available | Negative | 397035 - 398675 | 62420.7 |
| threonine synthase | DWX60_01540 | Not Available | Negative | 399943 - 401244 | 47603.8 |
| cofactor-independent phosphoglycerate mutase | DWX60_01545 | Not Available | Negative | 401335 - 402546 | 44511.4 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DWX60_01550 | Not Available | Negative | 402551 - 404983 | 88625.7 |
| dna repair protein rada | DWX60_01555 | Not Available | Positive | 405511 - 406878 | 49904.5 |
| duf1847 domain-containing protein | DWX60_01560 | Not Available | Positive | 406918 - 407559 | 24053.9 |
| fad-binding protein | DWX60_01565 | Not Available | Positive | 407574 - 409217 | 60642.6 |
| luxr family transcriptional regulator | DWX60_01570 | Not Available | Positive | 409345 - 409965 | 23357.5 |
| tonb-dependent receptor | DWX60_01575 | Not Available | Positive | 410135 - 412558 | 91999.8 |
| hypothetical protein | DWX60_01580 | Not Available | Positive | 412939 - 413235 | 11174.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

