Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX60_01480 | Not Available | Positive | 384975 - 385412 | 16141.6 |
| abc transporter substrate-binding protein | DWX60_01485 | Not Available | Positive | 385414 - 386541 | 41805.9 |
| iron abc transporter permease | DWX60_01490 | Not Available | Positive | 386657 - 387688 | 36079.6 |
| abc transporter atp-binding protein | DWX60_01495 | Not Available | Positive | 387688 - 388695 | 37084.8 |
| hypothetical protein | DWX60_01500 | Not Available | Negative | 388943 - 389131 | 7252.13 |
| l-rhamnose mutarotase | DWX60_01505 | Not Available | Negative | 389423 - 389809 | 15388.7 |
| duf4998 domain-containing protein | DWX60_01510 | Not Available | Negative | 389869 - 390585 | 27467.4 |
| duf5126 domain-containing protein | DWX60_01515 | Not Available | Negative | 390560 - 391789 | 46483.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_01520 | Not Available | Negative | 391783 - 393720 | 74357.5 |
| tonb-dependent receptor | DWX60_01525 | Not Available | Negative | 393732 - 396938 | 119449.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

