Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DWX60_01430 | Not Available | Positive | 372297 - 372653 | 13384.4 |
| prephenate dehydratase | DWX60_01435 | Not Available | Positive | 372911 - 373753 | 31728.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWX60_01440 | Not Available | Positive | 373728 - 374912 | 45052.1 |
| 3-deoxy-7-phosphoheptulonate synthase | DWX60_01445 | Not Available | Positive | 374932 - 375999 | 39929.6 |
| sialidase | DWX60_01450 | Not Available | Negative | 376202 - 377911 | 64049.9 |
| fadr family transcriptional regulator | DWX60_01455 | Not Available | Negative | 377917 - 378663 | 28695.9 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DWX60_01460 | Not Available | Positive | 379166 - 379939 | 29390.4 |
| alpha/beta fold hydrolase | DWX60_01465 | Not Available | Negative | 380177 - 381148 | 34854.6 |
| tonb-dependent receptor | DWX60_01470 | Not Available | Positive | 381703 - 383724 | 76728.7 |
| hypothetical protein | DWX60_01475 | Not Available | Positive | 383738 - 384880 | 41063.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

