Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin family protein | DWX60_01380 | Not Available | Negative | 358331 - 359185 | 32964.4 |
| peptidase m24 family protein | DWX60_01385 | Not Available | Positive | 359515 - 360906 | 51737.2 |
| aminopeptidase | DWX60_01390 | Not Available | Positive | 360935 - 362146 | 45970.4 |
| single-stranded-dna-specific exonuclease recj | DWX60_01395 | Not Available | Positive | 362261 - 364033 | 66543.5 |
| recq family atp-dependent dna helicase | DWX60_01400 | Not Available | Positive | 364151 - 366046 | 72894.9 |
| o-glcnacase | DWX60_01405 | Not Available | Positive | 366093 - 368306 | 84944.2 |
| tetratricopeptide repeat protein | DWX60_01410 | Not Available | Positive | 368321 - 369271 | 35751.7 |
| ai-2e family transporter | DWX60_01415 | Not Available | Positive | 369331 - 370332 | 36957.9 |
| pyridoxal phosphate-dependent aminotransferase | DWX60_01420 | Not Available | Negative | 370333 - 371508 | 44742.1 |
| protease | DWX60_01425 | Not Available | Negative | 371577 - 372107 | 18966.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

